Faculty Profiles

Michael D Lynch
Assistant Professor in the Department of Biomedical Engineering



M.D., University of Colorado School of Medicine 2007

Ph.D., University of Colorado at Boulder 2005

Burg, JM, Cooper, CB, Ye, Z, Reed, BR, Moreb, EA, and Lynch, MD. "Large-scale bioprocess competitiveness: the potential of dynamic metabolic control in two-stage fermentations." Current Opinion in Chemical Engineering 14 (November 2016): 121-136. Full Text

Lynch, MD. "Into new territory: improved microbial synthesis through engineering of the essential metabolic network." Current opinion in biotechnology 38 (April 2016): 106-111. (Review) Full Text

Boyle, NR, Reynolds, TS, Evans, R, Lynch, M, and Gill, RT. "Recombineering to homogeneity: extension of multiplex recombineering to large-scale genome editing." Biotechnology journal 8.5 (May 2013): 515-522. (Review) Full Text

Garst, A, Lynch, M, Evans, R, and Gill, RT. "Strategies for the multiplex mapping of genes to traits." Microbial cell factories 12 (January 2013): 99-. (Review) Full Text

Warnecke, TE, Lynch, MD, Lipscomb, ML, and Gill, RT. "Identification of a 21 amino acid peptide conferring 3-hydroxypropionic acid stress-tolerance to Escherichia coli." Biotechnology and bioengineering 109.5 (May 2012): 1347-1352. (Letter) Full Text

Prior, JE, Lynch, MD, and Gill, RT. "Broad-host-range vectors for protein expression across gram negative hosts." Biotechnology and bioengineering 106.2 (June 2010): 326-332. Full Text

Warnecke, TE, Lynch, MD, Karimpour-Fard, A, Lipscomb, ML, Handke, P, Mills, T, Ramey, CJ, Hoang, T, and Gill, RT. "Rapid dissection of a complex phenotype through genomic-scale mapping of fitness altering genes." Metabolic engineering 12.3 (May 2010): 241-250. Full Text

Singh, A, Lynch, MD, and Gill, RT. "Genes restoring redox balance in fermentation-deficient E. coli NZN111." Metabolic engineering 11.6 (November 2009): 347-354. Full Text

Gall, S, Lynch, MD, Sandoval, NR, and Gill, RT. "Parallel mapping of genotypes to phenotypes contributing to overall biological fitness." Metabolic engineering 10.6 (November 2008): 382-393. Full Text

Warnecke, TE, Lynch, MD, Karimpour-Fard, A, Sandoval, N, and Gill, RT. "A genomics approach to improve the analysis and design of strain selections." Metabolic engineering 10.3-4 (May 9, 2008): 154-165. Full Text


Lipscomb, TW, Lipscomb, ML, Gill, RT, and Lynch, MD. "Metabolic Engineering of Recombinant E. coli for the Production of 3-Hydroxypropionate." Engineering Complex Phenotypes in Industrial Strains. October 24, 2012. 185-120. Full Text

Lynch, MD, Manness, PC, Lipscomb, M, Warnecke, T, and Liao, H. "Novel biological conversion of hydrogen and carbon dioxide directly into biodiesel." December 1, 2011.

Lipscomb, ML, Warnecke, T, Hans, L, Maness, LP, and Lynch, MD. "Novel biological conversion of hydrogen and carbon dioxide directly into biodiesel." August 25, 2011.

Lynch, MD, Warnecke, T, Singh, A, and Gill, RT. "Genomics tools for elucidating the function of trait conferring genes." December 1, 2005.